Basic Information
VIS ID
TVIS42001037
Fusion event
EBV-chr20:p12.2 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
129041
Orient
-
Integrated sequence
GATCTTTGGAATCTGGCGGGGCTCCCCAGCCACAGCACCCTGCGAACATTTATTCATTATAACGGGGGAGAGAAAGAGAGAGCTGCTGAGATAGGTGGTG| |CTGGCCTCGTATAGCGCCGAGCCTCGGACCTCACGGTCACTAGAGATTATGAATGTCACATTGATGAGCGGGATAATCATCAGAACTTTGTCGAGCCTGT
Host Sequence
Chromosome
chr20
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
11015138/11034490 (Hg38)
End
11015138/11034490 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA20B
Nearest miRNA
hsa-mir-103a-2/Upstream/384795; hsa-mir-1-1/Downstream/7436125;
Nearest TSS
ENST00000382410/Upstream/6730; ENST00000450368/Downstream/234345;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/359527, chr20-CpG: 37/Downstream/652384
Nearby gene
C20orf187(-5124) ;
Upstream sequence
catgtaaacaccctgtacatgtaccccttgtatctagaataaaagtttaaaTTTAAAGGAAACAACATGCCACCATACATGCACACACACacacaaaaaa
Downstream sequence
ggtggtggaggtgatggcagtggtggtgggggtgaaggcagtggttggtggtggttgtggtggtgaagacagaggtggtagagatagtggaggtggtggt
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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