Basic Information
VIS ID
TVIS42001038
Fusion event
EBV-chr20:p12.1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Start
79694
Orient
-
Integrated sequence
GATTGGTGGCATTTTCTGAGCCACCAAATGCACCTCGAGGTTGGTAGACAGCCTTCGTATGGGGTGTCAGCTGGCCAAAGTCAAGATCAAGTTGATGCTT| |TTTGCCCCCGACATCGAAATTGATAGTTACATTGACATCTGCCGTGCAAACATTGCATGTGGGGTAAAATGGGAATTCCGGAATCTCAACATTGAAAAAA
Host Sequence
Chromosome
chr20
Cytoband
p12.1
Reference genome
End
16238415/16257770 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/5608075; hsa-mir-1-1/Downstream/2212845;
Upstream sequence
catTCTACCAATGCTAAcatcatcaccatcaccatcatcatcatcactaccaccaccagcatctccattatcaacactgccgccatcagcatcacctcca
Downstream sequence
AAAACACACACACTCCTTCCCCATCCCAAAGAGACACACCCCTTCCCCATCCCAAAGAGACACACCCCTTCCCCATCCCAAAGAGACACACCCCTTCCCC
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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