Basic Information
VIS ID
TVIS42001039
Fusion event
EBV-KIZ integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
84
Orient
-
Integrated sequence
AGAATTCGTCTTGCTCTATTCACCCTTACTTTTCTTCTTGCCCGTTCTCTTTCTTAGTATGAATCCAGTATGCCTGCCTGTAAT| |TGTTGCGCCCTACCTCTTTTGGCTGGCGGCTATTGCCGCCTCGTGTTTCACGGCCTCAGTTAGTACCGTTGTGACCGCCACCGGCTTGGCCCTCTCACTT
Host Sequence
Chromosome
chr20
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
21122632/21141991 (Hg38)
End
21122632/21141991 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA20A
Target gene
KIZ
Nearest miRNA
hsa-mir-103a-2/Upstream/2671300; hsa-mir-1-1/Downstream/5066195;
Nearest TSS
ENST00000382410/Upstream/15931; ENST00000441136/Downstream/3595;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/15665, chr20-CpG: 90/Downstream/161007
Upstream sequence
AATATACATGTTTGTGTGACTGTTGTCCCCATGGTTTAGTGCTTCCAAGGTACCAGAGTTGATTGGTTCATTGAGGGgtatgtatgtgtgtgtgtgtgtg
Downstream sequence
cttctTGCCCCCAAATCTGTCTTCTCCAGATCCTCTAACTCTTCCACCCCCATATCTTCCCACTGTCTCTCTACATCTTTATCTCCCGcacacgtacaca
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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