VISDB Viral Integration Site DataBase

VIS ID

TVIS42001041

Fusion event

EBV-PPP1R16B integration

Validated

No

Detection method

GenCap Enrichment+NGS

Data source

Curated

Sample type

Disease

Gastric carcinoma (GC)

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

EBV

Reference genome

Start

97546

Orient

-

Integrated sequence

ACTGTGTGCAGCTTTGACGATGGAGTAGATTTGCCTCCCTGGTTTCCACCTATGGTGGAAGGGGCTGCCGCGGAGGGTGATGACGGAGATGACGGAGATG| |AAGGAGGTGATGGAGATGAGGGTGAGGAAGGGCAGGAGTGATGTAACTTGTTAGGAGACGCCCTCAATCGTATTAAAAGCCGTGTATTCCCCCGCACTAA

Chromosome

chr20

Cytoband

q11.23

Reference genome

Start

End

37524656/38896013 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-let-7b-5p ; hsa-mir-4747-5p ; hsa-mir-5196-5p ; hsa-mir-3934-3p ; hsa-mir-6719-3p ; hsa-mir-3670 ; hsa-mir-4526 ; hsa-mir-6730-3p ; hsa-mir-3660 ; hsa-mir-3664-3p ; hsa-mir-3200-5p ; hsa-mir-6854-5p ; hsa-mir-2392 ; hsa-mir-7855-5p ; hsa-mir-6807-5p ; hsa-mir-4792 ; hsa-mir-4710 ; hsa-mir-1251-3p ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-6804-3p ; hsa-mir-8069 ; hsa-mir-3065-3p ; hsa-mir-1322 ; hsa-mir-1272 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-627-5p ; hsa-mir-6716-5p ; hsa-mir-924 ; hsa-mir-4682 ; hsa-mir-4653-5p ; hsa-mir-3921 ; hsa-mir-501-5p ; hsa-mir-574-5p ; hsa-mir-4455 ; hsa-mir-147a ; hsa-mir-6818-5p ; hsa-mir-3152-3p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-581 ; hsa-mir-511-3p ; hsa-mir-5089-5p ; hsa-mir-6506-5p ; hsa-mir-7977 ; hsa-mir-6849-3p ; hsa-mir-619-5p ; hsa-mir-1207-3p ; hsa-mir-3614-3p ; hsa-mir-34a-3p ; hsa-mir-1302 ; hsa-mir-4298 ; hsa-mir-4648 ; hsa-mir-6165 ; hsa-mir-6828-5p ; hsa-mir-873-5p

Nearest miRNA

hsa-mir-103a-2/Upstream/379381; hsa-mir-1-1/Downstream/2273010;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/59809, chr20-CpG: 109/Downstream/30098

Upstream sequence

TTTCTCACCCCGTTCACTGAGGGccctcaagtctgtttctaagcagcagcctgagggatccatttttataatctgaaatcagatATCATACCCACACCCC

Downstream sequence

ccttctttctttcctctcttccttctttcttttctcccttcctcccttcctttcttccctcccttcctccctttctgcctttcttctgtctcccctccct