Basic Information
VIS ID
TVIS42001043
Fusion event
EBV-chr20:q13.11 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
167089
Orient
-
Integrated sequence
CTGCTGCTCTAGCAAAGCACGCTCCAGGACGTGTACCATCTCGAGAGTGAGGCACAGCTGTTTTCGTGGACTTTTATACAGTAAGGACAAGGAAAGAAGG| |CCAGAGGAATGTGGAAAGATGAGCGAGGACAGGTGTGGAGGTTTTGGGCTAGCTCTTAGTTTCTGGGTGTGAGAGAGGGATTAAAGTGCTTATGCGCAAA
Host Sequence
Chromosome
chr20
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
41892064/43263424 (Hg38)
End
41892064/43263424 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/2094346; hsa-mir-1-1/Downstream/1144696;
Nearest TSS
ENST00000382410/Upstream/73202; ENST00000483871/Downstream/194504;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/72852, chr20-CpG: 160/Downstream/193884
Upstream sequence
atctacccatatgtccatccatccatttgtccatccatttatccttcagtccatcccccatccatccatttacccatctgtcgacccatcaacccattca
Downstream sequence
tctggcactaagcctaggttttgagataaacaaaaccagggaagagatccctattcaggcaacttgtgcttttaatcttacaacacaagcctccctcagc
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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