Basic Information
VIS ID
TVIS42001044
Fusion event
EBV-LINC01270 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
63837
Orient
+
Integrated sequence
CCTCTATGTCGCTCTGACCTATGAGGAAGCCGGGCCGCGGTTTACGTTTTTCCAGTCGTCCCGCGGCCACTGTCAGATCATGAATATCTTAAGAATTTAT| |TACTCACCATCCATCATGCACCGCTATGCTGTGGTCCAGCCCCTACATATAGAGGAGCTAACCTTCGGGGCGGTTGCCTGTCTGGGGACATTTAGTGCTA
Host Sequence
Chromosome
chr20
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
48917642/50301105 (Hg38)
End
48917642/50301105 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC01270
Nearest miRNA
hsa-mir-103a-2/Upstream/437152; hsa-mir-1-1/Downstream/284681;
Nearest TSS
ENST00000382410/Upstream/8385; ENST00000457853/Downstream/9869;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/108620, chr20-CpG: 15/Downstream/42522
Upstream sequence
ttccctccctccctccttccttctttcttccctccctccctcctttcttctttcttccctccctccctccttccttctttctctcctcccttcccccctt
Downstream sequence
gaatggattggtgggtaggagggtggataatagaatagatggatgggtaggatggatggatggatggatggataggagaatggataggtagaaaaatgaa
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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