Basic Information
VIS ID
TVIS42001045
Fusion event
EBV-LOC100133286 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
168504
Orient
+
Integrated sequence
AGGATGAGGTCTAGGAAGAAGGCTAGGAAGAAGGCCAAAAGCTGCCAGATGGTGGCACCAAGTCGCCAGAGCATCTCCAATAAGTAGATCCAGATACCTA| |AGACTGCGTTGAAAAAAGAGTGTTAGGGTTGGAAAAGTGGGGGTGTGGTAAATAATTCCTAGGGAATGTTAGATCTTACCAAGTAAGCACCCGAAGATGA
Host Sequence
Chromosome
chr21
Cytoband
q22.12
Reference genome
GRCh37/hg19
Start
37478984/36106686 (Hg38)
End
37478984/36106686 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC100133286
Nearest miRNA
hsa-let-7c/Upstream/385878; hsa-mir-3197/Downstream/3340324;
Nearest TSS
ENST00000624081/Upstream/1805; ENST00000290354/Downstream/28226;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/36206, chr21-CpG: 38/Downstream/23461
Upstream sequence
caaaagcaaagtttgctaaaagttaacagtgtaacatgtattatcctaacttctaatcttgtggccttagacacagacatgaagttcacttgggaaaaga
Downstream sequence
atggttatcatatttgagaaaaaaaaggggggggggtagaatttatgtaaaaaggaatgttatggtaaattcttaaagtaaattaactggttgtttaaag
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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