PDE9A _STAD.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS42001046
Fusion event
EBV-PDE9A integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
156981
Orient
-
Integrated sequence
GAAGATGCCCTCCAGGTCAAAGACGTTGGAGGCACGCTGTTCGTCCCGTGAGTACAGCTCCAGGGAGGCAAAGTCAATGTTCTCGATGAGGGAGGTGTTT| |AGTGAGATGAAGGTCTGCAGGGTGGCAATGCCGTCCAGCTCGATGGTTTTAAAGTGGTGGTAGTCGTTGTAGACGTGGATCTCGTTGCCGGACTGGAAGT
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
44111424/42691314 (Hg38)
End
44111424/42691314 (Hg38)
Orient
-
Location type
Intronic
Target gene
PDE9A
Nearest miRNA
hsa-let-7c/Upstream/944473; hsa-mir-5692b/Downstream/259614;
Nearest TSS
ENST00000624081/Upstream/5117; ENST00000466472/Downstream/40444;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/4878, chr21-CpG: 27/Downstream/146542
Upstream sequence
Cccatcgccatcaccatccagattcacccagacccatcaccatctccatctaaagtcacccagacccatcaccatcactatccaaagtcacgcatcctgt
Downstream sequence
cactatcaccatccaaagtcaccaagccccttcaccatcaccatccaaagtcacccagtcctatcaccatcaccatcCTAAGTTACCAGCCTTTCaccat
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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