Basic Information
VIS ID
TVIS42001047
Fusion event
EBV-chr22:q13.31 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
57739
Orient
-
Integrated sequence
TGGTGGTGGGGGCTGCTGCTGCAGTCGGGGAAGGGGATGGGGTGGTCAGAGGGATTTTTGGGTTCGAGGGAGCTGCCTGTGGCAGAGGGATGGGTATTTG| |CAAAGGGAGGCGAGGAGATGGAGTGACTGAAGGAGCGATAGTTGAGACTGGCGCGGGGTGGGGTGTCGGGGAGGCGGGTGGTGATTGGTGAGGGATGGGG
Host Sequence
Chromosome
chr22
Cytoband
q13.31
Reference genome
GRCh37/hg19
Start
46390127/45994247 (Hg38)
End
46390127/45994247 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA22A
Nearest miRNA
hsa-mir-1249/Upstream/233649; hsa-let-7a-3/Downstream/96797;
Nearest TSS
ENST00000624155/Upstream/17118; ENST00000608290/Downstream/19359;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/14893, chr22-CpG: 61/Downstream/33157
Upstream sequence
aataatgatggtgatggtgctggaggtgatagtgatggtgatggtggtgatgatggaggtagggggtttgacggtGGAGGAAGTGGTAGTGGTGGTGTTT
Downstream sequence
TTGTTGGTAGTAGTGCTGTTTTAGAGAATTAAAAAGAGGAAGAAGATCTCTTCTCCACCCACTGGGTCCAGTTTGGAACCTGGACATGCCCTCATCATGT
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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