Basic Information
VIS ID
TVIS42001049
Fusion event
EBV-chr3:q25.1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Start
963
Orient
-
Integrated sequence
ATTATAGCTCTGGCACTGCTAGCGTCACTGATTTTGGGCACACTTAACTTGACTACAATGTTCCTTCTCATGCTCCTATGGACACTTGGTAAGTTTTCCC| |TTCCTTTAACTCATTACTTGTTCTTTTGTAATCGCAGCTCTAACTTGGCATCTCTTTTACAGTGGTTCTCCTGATTTGCTCTTCGTGCTCTTCATGTCCA
Host Sequence
Chromosome
chr3
Cytoband
q25.1
Reference genome
End
150059994/150342207 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-let-7g/Upstream/15904301; hsa-mir-1224/Downstream/1223669;
Upstream sequence
ctagtctactactaccatcaaacacctccattgaatttctcagttcagttatagcattcttcagatctttaatttctgtttagcacttttttatactttc
Downstream sequence
TAAAGGAAGTGGATTTGACTTGGTGAAAATATGGTTATACAGCATATGATCACAAGTACTTTTTTAAACACCCTGAAAGAAAATATAGAGAAGTACACTC
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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