Basic Information
VIS ID
TVIS42001050
Fusion event
EBV-chr3:q25.32 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
43504
Orient
+
Integrated sequence
TCTTTCTAGGTGGATACCACAGTCCAGGCCCCCAAGGCTACCGTGCTAATTACCTCCTCATGTCCACCCCCACCCTGTGTTACTGTCGCCTGATTATCCT| |GGCTTAGCAGCCTCCAAGTTTTACAAGACGTCCCATTGCCCTGCCCTTGGTCCAAGTCTCGCCGGTTTTCAGCAGCCTGTTGTAGCCTGCCCCCAAGTTT
Host Sequence
Chromosome
chr3
Cytoband
q25.32
Reference genome
GRCh37/hg19
Start
158691399/158973610 (Hg38)
End
158691399/158973610 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA3D
Nearest miRNA
hsa-let-7g/Upstream/7407615; hsa-mir-1224/Downstream/309036;
Nearest TSS
ENST00000440867/Upstream/10682; ENST00000397832/Downstream/95642;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/171070, chr3-CpG: 166/Downstream/789547
Upstream sequence
TAGTCTCCAGTGCATTATTAGACTGTGAGGCATTTTGGTAGGAGCTGCAGCCGGTAGATGGCTAAAGAGGAGGACTTTGGGCAATCCAGAGTCAGAGTGA
Downstream sequence
GGAGAAGGGAGAGAAAATGGGGACACAGTGTTAGGGAAGGTAGGACTTGGTCGGGTCTACCTAATTCAAATCAATTGATAGCTCTAACCATGCCCTGACC
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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