Basic Information
VIS ID
TVIS42001051
Fusion event
EBV-chr4:p16.3 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
123895
Orient
+
Integrated sequence
GTGACAGAGAACCTTGAGAGCATTCTGTAGGTTAAACGCGAGGAGAAGGTTATTCTTGTTTACGATCCATGCCTCCACCGGTAGCTGCTGTGTGGGGTTG| |TCCAGCATTTTGATGGCGGCGGAGGTCGTGTACTTGGGATTGGGCATAAACAGGCCCACTGGGAAATAGTAGCTGTACTGCATTCTTCTGTTGAGGGGGT
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
44179/44183 (Hg38)
End
44179/44183 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Downstream/305974;
Nearest TSS
ENST00000502981/Downstream/9102;
Nearest CpG islands
None/Target, None/Upstream, chr4-CpG: 46/Downstream/9121
Nearby gene
LOC105374377(+4021) ;
Upstream sequence
tgaaaacacttCCAAAAAAAGTGTAGGTGTTATCAGTATATCATACCATGTGAGAGAAGGTGTAAAGCAACAAAAGGAgttttgttttgttttgttttgt
Downstream sequence
tttgttttgttttgtttttgagatggagtttcactcttgttgcccaggctggagtgcaatggcgccatctcagctcactgcaacctctgcctcccaggtt
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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