Basic Information
VIS ID
TVIS42001053
Fusion event
EBV-LOC105377271 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
41980
Orient
-
Integrated sequence
CTGAGGGAGCGGCCGTTGGTGGGTATGTGTTGGAATTGCTCCCACCCTCAATTTTCGCTTGCCTTCTTCCCTTGTTAACCTGATAGCATAGCCTCTAGGT| |TTCCTTGTAGGTCTGTTTGGGTTTGTTGGTTCACGTGGTGCTAACTTGAATTTTTTGGTTTTCTAGTTCCCTCTTAATTACATTTGTGCCAGATCTTGTA
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
72505349/71639632 (Hg38)
End
72505349/71639632 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377271
Nearest miRNA
hsa-mir-12113/Upstream/5362704; hsa-mir-1243/Downstream/4933936;
Nearest TSS
ENST00000502981/Upstream/300579; ENST00000344413/Downstream/114846;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/451880, chr4-CpG: 30/Downstream/392215
Upstream sequence
ggggctgggagggcccggagggggctgggccggggacccgggaggggtcgggacggggcggggtccgcgcggaggaggcggagctggaaggtgaaggggc
Downstream sequence
aaggaaagaccaatagagagagagaaaaaaaagacacagagaggaaaagaggtaaagagacagagtaagagacagagaggaagagacagagagacaaaga
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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