Basic Information
VIS ID
TVIS42001054
Fusion event
EBV-chr4:q21.23 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
10315
Orient
+
Integrated sequence
GGTGCATTTCACCCCAACCCCCCCTTTCGACTGTCATTTACAATAAAATGAAACCTTTTATTCTTGATTGCCTCTTGTGTTCTTGCCGCCCAGGTACCTT| |CCTGTGTTCTCCCCACGGGAAAAAGAATAGCTTCTGCAGAAGGCCATTGACGCAAGTTTTGCCCGTGGGGATTACCCGACCCAGCCACTTACAGCACATT
Host Sequence
Chromosome
chr4
Cytoband
q21.23
Reference genome
GRCh37/hg19
Start
85986062/85064909 (Hg38)
End
85986062/85064909 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/2311479; hsa-mir-1243/Downstream/657559;
Nearest TSS
ENST00000502981/Upstream/98518; ENST00000505856/Downstream/410205;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/98285, chr4-CpG: 29/Downstream/410660
Upstream sequence
gcctccatcgtcctgaggctgcccccctctgaccctcctgcccgcctcttcccagaacccctggattacttttcgggcctgcaggtagtcccgaaggatc
Downstream sequence
atgaagtaagcatagggcagaaggaaTTGGGAAGTCAGAATGTCAGAGTTGTGACATGGCTTGTGTGTGTCTGGATGAAGTGTGCCTGGAGGGTCTGGTG
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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