Basic Information
VIS ID
TVIS42001056
Fusion event
EBV-chr4:q28.1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
153112
Orient
+
Integrated sequence
CTGGGGATCTTTGCCAGCCTTCATACTAGATTCAGCGATCCCCCGGTTGGGAATCTTCGCCAGCCCCCCGTCCTGCTATCCCGCTCGTCGCCGCGCCTCC| |CATGCTAAGGGCCCCCTTCCTTTCCCTTGACTTTGGGGATATTCGGAGTCTGCTCTCGCCGCTCTCTTCTCTCGTTTAAACGAGAGAATAGTAGTAGGGT
Host Sequence
Chromosome
chr4
Cytoband
q28.1
Reference genome
GRCh37/hg19
Start
125412178/124491023 (Hg38)
End
125412178/124491023 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/9834169; hsa-mir-1305/Downstream/1016236;
Nearest TSS
ENST00000502981/Upstream/238979; ENST00000509444/Downstream/67411;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/985021, chr4-CpG: 64/Downstream/221502
Nearby gene
LINC02516(+8919) ;
Upstream sequence
ttatcaccattggtcacttagaggtacaaattgtataggaagggaagggcttagcagttttcagaatagtgagttggtttgagtattattcataggttta
Downstream sequence
aagaagaagaagaagaagaagaagaagaagaagaagaaaaagaagaagaagaaggaggaggaggagaagaagaaggaggaggaggaggaggagaagaaga
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
Curate