Basic Information
VIS ID
TVIS42001057
Fusion event
EBV-chr5:p15.33 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
139054
Orient
+
Integrated sequence
CTTTAGTGGGAACTAGTGGGAGTGCTGTGCCTCGGGTACCCCTATCCTATAGGTCCTACCGGAGCTCCTTGTCTTGATAATCCCTGTAAACACACACCAC| |CTAAGAACAAGGCATTGTTAACCTTTGGTGGAACCTAGTGTTAGTGTTGTGCTGTAAATAAGTGTCCAGCGCACCACTAGTCACCAGGTGTCACCGGAGG
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
4420418/4420305 (Hg38)
End
4420418/4420305 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-4277/Upstream/2711437; hsa-mir-10397/Downstream/2407548;
Nearest TSS
ENST00000502646/Upstream/284623; ENST00000503188/Downstream/19954;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/457907, chr5-CpG: 39/Downstream/445899
Upstream sequence
ttgttatgtttattgtgtgtttgtatgtgtgttgtgtgtatgtatgttgtgtgtatgtgtgttgtgtgtgtttgtgtgttgtatgtgtgttgtgtgtgtt
Downstream sequence
gtctttgctttttgtgtgttttttgtgtgtgcttgtgtgtgttgtgtgtgtgtgtattgtgtttgttgtgtgtgcacgtgtgtatatgtatgtgtgtgtg
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
Curate