ADAMTS12 _STAD.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS42001058
Fusion event
EBV-ADAMTS12 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
118544
Orient
-
Integrated sequence
TGATGTTCTGTGCAGTAACCTTAGTGGTGACATTGATGGTGGATGCGTTGGAAGTTGTTGGGACTGGTGTGACAGTTGTCCCAGTGAATGTCACCGTGGT| |TGTGTTGGTGCTCAGAATAGCAGTTGTGGTTATAGGGGCGCTAGTCGTGGTCAAGGTCGTAGACTGGTTTGTGCTAGGACCCGATGCCGACGGTGATGGT
Host Sequence
Chromosome
chr5
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
33626581/33626476 (Hg38)
End
33626581/33626476 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5A
Target gene
ADAMTS12
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-26b-5p
Nearest miRNA
hsa-mir-10397/Upstream/1232001; hsa-mir-103a-1/Downstream/2521416;
Nearest TSS
ENST00000502646/Upstream/2125; ENST00000330120/Downstream/213836;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/124218, chr5-CpG: 25/Downstream/265610
Upstream sequence
ggggtgatggtagtggtgatggtggtgggggtgatggtgatagtggtgatgtggtagtgatggtagtgatttgatggtaataatggtggtggtggtgatg
Downstream sequence
tggtagtggtggtggtCATTTgatggtagtggtggtaatgtggtaatggtggtggtgatttaatggtaatgatggtggtggtggtggtgatgtgatggtg
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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