Basic Information
VIS ID
TVIS42001059
Fusion event
EBV-LOC102467217 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
145606
Orient
-
Integrated sequence
TGGGTATTCACTAGTGAAGGCAACTAACACAGTTAGACGTGCTAGTTGTGCCCACTGGTGTTTATCCGGTCCCAAATGTCACCACAGAACACAGGGGGCT| |GGATTTGGCAGCAGCACTTGTGCTTTTGTTGATTTTTACCCGTGTATCAGAGTGGGGGATGCTAGCCAATTTAGCTTCCCCTCCCCTTAACAGGGGGTCT
Host Sequence
Chromosome
chr5
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
114989433/115653736 (Hg38)
End
114989433/115653736 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC102467217
Nearest miRNA
hsa-mir-10397/Upstream/5139821; hsa-mir-103a-1/Downstream/602007;
Nearest TSS
ENST00000502646/Upstream/20744; ENST00000512900/Downstream/38431;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/27464, chr5-CpG: 122/Downstream/161915
Upstream sequence
aaaaccggacgagtcttacaggttagttcaggatctgaaccttatcaaccaaattgtcttgcctatccaccccgtggtgccaaacccatatactctccta
Downstream sequence
tcctccacacctccctccacaacccattattctgttctagataaacctagctgaccccataaatcctaaatccttcccctactcccctttccattcctta
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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