VISDB Viral Integration Site DataBase

VIS ID

TVIS42001060

Fusion event

EBV-NEDD9 integration

Validated

No

Detection method

GenCap Enrichment+NGS

Data source

Curated

Sample type

Disease

Gastric carcinoma (GC)

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

EBV

Reference genome

Start

100010

Orient

+

Integrated sequence

GGGCATGCGTGAACTGCCAGCGTCCTGAGGCTGCTGCTTTCCTCGGATGCCAAAGAAGACGTTGAGATGCGTGTAGCCCAGAAGCGTGTAGTTCTCGGTG| |GTGGAGGCGTAGTCCAGGAGGCCGTGAAGGAGAGGCTCGTCTGAGGTGAACTCTATGTTGTCGCGAATCAGCATGTTGTTGGTAAATGTGCAGAAGGGGA

Chromosome

chr6

Cytoband

p24.2

Reference genome

Start

End

11313492/11313259 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-18a-5p ; hsa-mir-145-5p ; hsa-mir-30c-5p ; hsa-mir-218-5p ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-642a-5p ; hsa-mir-4477a ; hsa-mir-5682 ; hsa-mir-7110-5p ; hsa-mir-6842-5p ; hsa-mir-6752-5p ; hsa-mir-6835-5p ; hsa-mir-5702 ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6871-3p ; hsa-mir-29c-3p ; hsa-mir-29b-3p ; hsa-mir-29a-3p ; hsa-mir-4506 ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-3912-3p

Nearest miRNA

hsa-mir-3691/Upstream/873465; hsa-mir-10398/Downstream/4828297;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/218825, chr6-CpG: 182/Downstream/224045

Nearest cancer related gene

NEDD9(OG, No orient, 0)

Upstream sequence

aacagcagtgttgagtaattgcaacagaggccgtgttgcccacagaagctaaaatatttactatttggccctttacagaactagtttgctgacccctgAT

Downstream sequence

tggatggatggatgaatagaaaattgggtggattgttgaatggatgggtggattaatgaacggatggatgggtggatagatagtggatggatggctgagt