Basic Information
VIS ID
TVIS42001061
Fusion event
EBV-chr6:p12.3 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
168552
Orient
+
Integrated sequence
ATGGTGGCACCAAGTCGCCAGAGCATCTCCAATAAGTAGATCCAGATACCTAAGACTGCGTTGAAAAAAGAGTGTTAGGGTTGGAAAAGTGGGGGTGTGG| |TAAATAATTCCTAGGGAATGTTAGATCTTACCAAGTAAGCACCCGAAGATGAACAGCACAATTCCAAGGAACAATGCCTGTCCGTGCAAATTCCAGAGAG
Host Sequence
Chromosome
chr6
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
48479184/48511448 (Hg38)
End
48479184/48511448 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/3313678; hsa-mir-10524/Downstream/3632901;
Nearest TSS
ENST00000381078/Upstream/442759; ENST00000335783/Downstream/951743;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/442554, chr6-CpG: 20/Downstream/951773
Upstream sequence
TGATTCACCAAAGAGTCTAGGCTCCACTCACTTTCCATTATTGAATGATTAATGGCATGCTCACTAACTTTCGAAGGGTAAATAAACTAGTTGACAGAGT
Downstream sequence
cctgaattctcttctcattacagaagacgttgtttaaaacctaagtccaatcacatcactcctctgcccacagccctctagtgactccctgtttctctcg
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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