Basic Information
VIS ID
TVIS42001062
Fusion event
EBV-chr6:q14.3 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
128745
Orient
-
Integrated sequence
ATCTTGTGAACCAGAAAGATACCCAGAGCAAAAGCAATAAAGTACAGGATTATTGCCAAAACAACGTGTGCTCTTTCTTCATACAGGCCCGCAATTTCCA| |TGACAGTCCCGTTGGTGGTCAGCAGCAGATAGTGAACGTGGAGGTTGTCAAAATCAAAGTAGTTGGAGCTCAAGATGGAGTTTTGGACTTCCTGGGAGGT
Host Sequence
Chromosome
chr6
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
87043549/86333831 (Hg38)
End
87043549/86333831 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/7794522; hsa-mir-1202/Downstream/3978911;
Nearest TSS
ENST00000381078/Upstream/690039; ENST00000305344/Downstream/603475;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/654391, chr6-CpG: 43/Downstream/603704
Upstream sequence
GTCATACAATTGATTCACCAAAGAGTCTAGGCTCCACTCACTTTCCATTATTGAATGATTAATGGCATGCTCACTAACTTTCGAAGGGTAAATAAACTAG
Downstream sequence
caaccaaagtcccagcaggatttctatttgtagaaaacaatatagtgattctCCAGGTGATTCCATTTTGTAGCTAGAGTTCCAAActgctgcactagac
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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