hsa-mir-451a _STAD.png
ZDHHC14 _STAD.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS42001063
Fusion event
EBV-ZDHHC14 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
89540
Orient
+
Integrated sequence
GGAAACACCCATTCCAGGTGTGCTTCTTTTTGGTGAAATAAAAACAGCATCCTTTATATGAAAATGTGTATTCTCTGGTGTTGCAGTATGTACAGTTAGC| |TTTGGTATAGTTTTGGGGTACCTGAAATGTGTGCAGGGTGGGTGTCCAATGTGGCAGTTTTACCTCTTTGTCCCCATACTCCTGCTCGGCCGTCTTGTTA
Host Sequence
Chromosome
chr6
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
157906535/157485503 (Hg38)
End
157906535/157485503 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZDHHC14
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-124-3p ; hsa-mir-130b-3p ; hsa-mir-587 ; hsa-mir-5581-3p ; hsa-mir-3140-3p ; hsa-mir-6872-3p ; hsa-mir-302f ; hsa-mir-451a ; hsa-mir-6511b-5p ; hsa-mir-676-5p ; hsa-mir-6811-5p
Nearest miRNA
hsa-mir-10398/Upstream/705772; hsa-mir-1913/Downstream/43629;
Nearest TSS
ENST00000381078/Upstream/104370; ENST00000523468/Downstream/57082;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/103158, chr6-CpG: 29/Downstream/107277
Upstream sequence
GGAAAAGTAAATATTTGGGAATGTGAGAGGGTTATTGTATTGTGTTGAGCTCTTTAGAATCAATGAAGGTCTGTCCTCTACTCCTGTAAAAACCTGGAAC
Downstream sequence
TTTTTGTTTTCATTTTTCTTCTGGCTTTATGGTTTTTCTCCCTGTCCCACTTTTCCCACATTGATTTTGCATTTCTGGCAGAGATGGGCAGAGCCCCAGT
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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