Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS42001064
Fusion event
EBV-LPA integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Start
43074
Orient
+
Integrated sequence
AAGTGTGTAAGCACACACGTAATTTGCAAGCGGTGCTTCACGCTCTTCGTTAAAATAACACAAGGACAAGATACTAAAGAAATAACTGAGGTGAGTGTGG| |GAAGATGGGAATACTATGTGTTATGTTAACGGGTGAGAGCCTATACTGCAGCCCAGACTCGGGGGGAGGAGGAAATGGTAAGAGTTATACTCTACTTATC
Host Sequence
Chromosome
chr6
Cytoband
q25.3
Reference genome
End
160956669/160535637 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10398/Upstream/1770884; hsa-mir-1913/Downstream/5973717;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/172534, chr6-CpG: 36/Downstream/143423
Upstream sequence
TTTGGGGAAAAGTAAATATTTGGGAATGTGAGAGGGTTATTGTATTGTGTTGAGCTCTTTAGAATCAATGAAGGTCTGTCCTCTACTCCTGTAAAAACCT
Downstream sequence
tggtggtgatggtgatggtagtgccagtaagaatgatgatagtggtggcgatgatgttgatggggatgatggtggtagtggtggacggtgatgatgatgA
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.