Basic Information
VIS ID
TVIS42001065
Fusion event
EBV-chr6:q27 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
63988
Orient
-
Integrated sequence
GAGGAGCTAACCTTCGGGGCGGTTGCCTGTCTGGGGACATTTAGTGCTACTGACGGTTGGAGGAGGTCTGCCTTCAATTACCGTGGCTCTAGCCTCCCCG| |TGGTGGAGATTGACAGCTTTTATTCCAACGTCTCTGACTGGGAGGTGATTCTCTAGACTTAACGGGAGGAAACAGGAGGAGGAGGGGGACAAGAGCACAA
Host Sequence
Chromosome
chr6
Cytoband
q27
Reference genome
GRCh37/hg19
Start
165339803/164926314 (Hg38)
End
165339803/164926314 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/6161561; hsa-mir-1913/Downstream/1583040;
Nearest TSS
ENST00000381078/Upstream/98564; ENST00000435810/Downstream/355708;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/588967, chr6-CpG: 31/Downstream/407960
Upstream sequence
TCTACCTCGTATCCACCAAGGGTTGGCTGGGTACCCTTCGAGGTCAAATGGGAAAAAATCTCATGTACCTTTACCTTCCTTAAATGGCTGTTTTGGGCAC
Downstream sequence
accacacactcacCTATACCTATACcacacacatacaacacttcatactcacacatgcctacactacacactcacacacacactcacatatacctgcacc
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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