hsa-mir-5579-5p _STAD.png
hsa-mir-6867-5p _STAD.png
hsa-mir-223-5p _STAD.png
PDE10A _STAD.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS42001066
Fusion event
EBV-PDE10A integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
37103
Orient
-
Integrated sequence
TCATCAAAGCACCCCAAATGATCCAGATAGTCCAGAACCACGGTCCCCGACTGTATTTTATAACATTCCACCTATGCCATTACCCCCCTCACAATTGCCA| |CCACCAGCAGCACCAGCACAGCCACCTCCAGGGGTCATCAACGACCAACAATTACATCATCTACCCTCGGGGCCACCATGGTGGCCACCCATCTGCGACC
Host Sequence
Chromosome
chr6
Cytoband
q27
Reference genome
GRCh37/hg19
Start
166162784/165749296 (Hg38)
End
166162784/165749296 (Hg38)
Orient
-
Location type
Intronic
Target gene
PDE10A
miRNAs that regulate target gene
hsa-mir-1287-3p ; hsa-mir-190a-3p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-511-3p ; hsa-mir-5011-5p ; hsa-mir-7151-5p ; hsa-mir-5681b ; hsa-mir-5579-5p ; hsa-mir-33a-3p
Nearest miRNA
hsa-mir-10398/Upstream/6984543; hsa-mir-1913/Downstream/760058;
Nearest TSS
ENST00000381078/Upstream/86742; ENST00000435810/Downstream/4893;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/22491, chr6-CpG: 90/Downstream/55223
Upstream sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Downstream sequence
catcatcaccatcaccatcatcaccatcaccaataccaccatcaccaccaccattatcaccatcaccatcatcaccatcaccaccaccatcatcaccatt
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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