Basic Information
VIS ID
TVIS42001067
Fusion event
EBV-chr7:p22.3 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
82941
Orient
-
Integrated sequence
TTTCCGGATCTACAAGATCCTCCAGATGAGGCCTAAGCAAAGGTGTAGAAGTGTGTCCCCCTCCATTCCACCCACTGATAATACGCCCGACAATAAAGTT| |GATGATATTGAATTCCACACCTGCTTGTGTTTGTGATTTTATTTCATATTCCATGAGAGAGACCTCGCATATTTGCAGAAGGGTCACTGAAACATCTTAT
Host Sequence
Chromosome
chr7
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
396029/356063 (Hg38)
End
396029/356063 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA7B
Nearest miRNA
hsa-mir-10399/Downstream/666870;
Nearest TSS
ENST00000635602/Upstream/64719; ENST00000515213/Downstream/23296;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/2140, chr7-CpG: 18/Downstream/4433
Upstream sequence
atccatcttcagagcttctctttcttccccaaggtaagtctgtcagcagagaaccctgaccgcaccctcatgtgttttctcccccaggaggcgcttggaa
Downstream sequence
tcatcaccatcaccatcaccaccatcaccatcaccaccatcagcatcaccaccatcagcatcaccaccatcagcatcaccaccatcaccatcactgtcat
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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