PRKAR1B _STAD.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS42001068
Fusion event
EBV-PRKAR1B integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
108257
Orient
+
Integrated sequence
GGGTGGGGGTGGGTGCAAGAATTGGGGCTGGGAATGGAGAGGGGAGTGGGCTAGGTGCCGACACCGGGGTGCCAAGATAATGGATTGAGTAAGCATGGGG| |CTCTGATCGGGTCCGCCGGGTTCTCAGGGGTGTAGTGGGTGGGCATTGCATATTTTTGCCGCGGTGCTGTTGGGCCTTGGACTCGGGGTGATCATCCGTA
Host Sequence
Chromosome
chr7
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
628290/588653 (Hg38)
End
628290/588653 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7B
Target gene
PRKAR1B
miRNAs that regulate target gene
hsa-mir-218-5p
Nearest miRNA
hsa-mir-10399/Downstream/434280;
Nearest TSS
ENST00000635602/Upstream/26695; ENST00000429872/Downstream/14030;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/11444, chr7-CpG: 25/Downstream/3546
Upstream sequence
tacacacatatatatacacatatatatacatattataactacatatatatacacacacacatacatatacatgcacacatatgtttattgcagcactatt
Downstream sequence
gtgaggatagtgacagtggtgatgacgatgatggtgatggtggtgatggtgatggtgatggtggtgatggtggtgaggatagtgacagtggtgatggtga
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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