Basic Information
VIS ID
TVIS42001069
Fusion event
EBV-PSMG3-AS1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
169550
Orient
+
Integrated sequence
GAGGCAAGGCTGTGGGGTAACCGTAGGGGAGGCGGGTGAGGCGGCTAAGAGGGCTAAGGGTCGGCGGGTGACGAAGCAGCAGACGGCGGATATGGGAATT| |TCAGAATGAGGTGGCGGATTCAGGCGAAAAGGGTGTGGGCTGTGCGAGTGTCATGAGGCAGGCGCGGAAAGTCGCTGCGGCTTGCTGGGGCATGGGGGGC
Host Sequence
Chromosome
chr7
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
1618257/1578621 (Hg38)
End
1618257/1578621 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA7B
Target gene
PSMG3-AS1
Nearest miRNA
hsa-mir-339/Upstream/555595; hsa-mir-10399/Downstream/265559;
Nearest TSS
ENST00000635602/Upstream/7616; ENST00000421380/Downstream/42033;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/8220, chr7-CpG: 17/Downstream/23447
Upstream sequence
agcttctctttcttccccaagttaagtctgtcagcagagaaccctgaccgcaccctcttgtgttttctcccccaggaggcgcttggaaacaaccgtgaat
Downstream sequence
atccatccatccaCTCACCCATCCATCCGCTCATCCATTCATGTATTCACTcatccactcattcatccatccgatcatccattcatgtattcactcatcc
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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