Basic Information
VIS ID
TVIS42001071
Fusion event
EBV-chr7:q21.11 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
66841
Orient
+
Integrated sequence
AGAGGGACTTGGAGTTTTACAAGTTCCTCTTTACGTTCCTGGCCATGGCCGAGAAGCTTGTGAACTTTAACATTGATGAACTGGTCACCAGCTTCGAGAG| |CCACGACATTGATCACTACTACACCGAGCAGAAGGCCATGGAGAACGTCCACGGGGAGACTTATGCTAACATTTTAAACATGCTCTTTGATGGGGACAGG
Host Sequence
Chromosome
chr7
Cytoband
q21.11
Reference genome
GRCh37/hg19
Start
79305553/79676237 (Hg38)
End
79305553/79676237 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/3760968; hsa-mir-10399/Downstream/12527778;
Nearest TSS
ENST00000635602/Upstream/222663; ENST00000442586/Downstream/457718;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/221703, chr7-CpG: 135/Downstream/458240
Nearby gene
LOC105375369(-5066) ;
Upstream sequence
TTTACAGGGTTTAGCCAGGACTTACAATTGTTAAAGACTCTTTTCCTTTATTTCTCTCTTTTCCTTTATTTCTCTCTTCTTAAAAATTTTGACTTTGAAA
Downstream sequence
ctacataaagcttacattctaatcaagggagacatgtgcataagtcaaatataaaatatattttatgaagtatatcaggtAAGGCAGTAGAGAATATTCA
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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