Basic Information
VIS ID
TVIS42001072
Fusion event
EBV-chr7:q31.2 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Start
1350
Orient
+
Integrated sequence
TAACACACATTTTACGCTTTGTTCCTTAGATTTGTTCTGCATGTTATTACTGATTGTCGCTGGCATACTCTTCATTCTTGCTATCCTGACCGAATGGGGC| |AGTGGAAATAGAACATACGGTCCAGTTTTTATGTGCCTCGGTGGCCTGCTCACCATGGTAGCCGGCGCTGTGTGGCTGACGGTGATGTCTAACACGCTTT
Host Sequence
Chromosome
chr7
Cytoband
q31.2
Reference genome
End
117321530/117681476 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/661157; hsa-mir-10399/Downstream/9376612;
Nearby gene
LOC111674471(-6297) ; LOC111674470(+659) ;
Upstream sequence
GCAAAGCAGAAAGAGGGCGGTCAGCGAAGAGCGGCTGCGGCTTGGGGCTAGCGTCCCAGCGCCCCGGGGACCAGGGTTAGGTGACCCCGAACCGTCCCTA
Downstream sequence
gaagtggaggcaccgtggaggagaagaggctgttggactgagaggtcatggtattggaggagttatttacattgatattaaaatctctaagagtgatggc
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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