Basic Information
VIS ID
TVIS42001073
Fusion event
EBV-LOC729732 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
82908
Orient
-
Integrated sequence
TCAGCTGTTGTTCACATGTGTCAGGATGACGAGTTTCCGGATCTACAAGATCCTCCAGATGAGGCCTAAGCAAAGGTGTAGAAGTGTGTCCCCCTCCATT| |CCACCCACTGATAATACGCCCGACAATAAAGTTGATGATATTGAATTCCACACCTGCTTGTGTTTGTGATTTTATTTCATATTCCATGAGAGAGACCTCG
Host Sequence
Chromosome
chr8
Cytoband
p23.1
Reference genome
GRCh37/hg19
Start
12443473/12585964 (Hg38)
End
12443473/12585964 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC729732
Nearest miRNA
hsa-mir-124-1/Upstream/1550662; hsa-mir-10400/Downstream/133168;
Nearest TSS
ENST00000518652/Upstream/109502; ENST00000530150/Downstream/140034;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/148593, chr8-CpG: 80/Downstream/14931
Upstream sequence
GATTCTTATTAAGGCCCTAATTCTGCCTTACTTTTGAAATGCATAATTAGCACACATATTTGTTCTCATGCTCTTATTTGTATTTATTTTACAATCATAC
Downstream sequence
tgggtggatagatggttagatgagtaaacgggtggatagatgcatgggtgagtggatggatagagggtggtggtggatgggtaggtggatgATAGCTGGG
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
Curate