Basic Information
VIS ID
TVIS42001074
Fusion event
EBV-chr8:p21.2 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
107263
Orient
-
Integrated sequence
CGAAAAAAGGTCTCGGGTCTTACAGACCTCTCGGCCTGGGTCTCGGCAGTGGGCTCCCCAACCGTGCTGTTTTTGGCCATCCTCAAGCTCTGGTCCATAC| |AGGTCTTCATCCAGGTCCTTTCCTACAAGCACGTCTTTCTCTCGGCCTTTGTGTACTTTTTGCACTTTCTGGCCTCAGTTCTACACGCCTGCGCATGTGT
Host Sequence
Chromosome
chr8
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
23949087/24091574 (Hg38)
End
23949087/24091574 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105379328 ; LOC107986931
Nearest miRNA
hsa-mir-124-1/Upstream/1846537; hsa-mir-10400/Downstream/862222;
Nearest TSS
ENST00000518652/Upstream/236767; ENST00000523440/Downstream/85506;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/364326, chr8-CpG: 165/Downstream/821815
Upstream sequence
GATTCTTATTAAGGCCCTAATTCTGCCTTACTTTTGAAATGCATAATTAGCACACATATTTGTTCTCATGCTCTTATTTGTATTTATTTTACAATCATAC
Downstream sequence
tggctggccggcttgtggaatggcaagaggctggtgaagtggagtgagcaagggagagggcactagtgaagtaagacaaatacaggggagctacaacaca
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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