Basic Information
VIS ID
TVIS42001076
Fusion event
EBV-chr8:q13.2 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
167482
Orient
+
Integrated sequence
TTGTGTTGTGCAGAGGTCTGATGTGTGTAGGAGGGGTGGGTTCAACGCAGGGGCGTTGGTGGCGGAGTCTGGCAACGCCCGGGTCCTTGCTACCTGTGTG| |GTGTGTTAAGGGCTGGGTAAAGGTGTCTGCCAATTCTCGCATGTCCTCCTTTCCCCTTGTTTTGAAATAGAATATGAATGTGGCTTTTCAGCCTAGACAG
Host Sequence
Chromosome
chr8
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
70191338/69279103 (Hg38)
End
70191338/69279103 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/4899846; hsa-mir-10400/Downstream/5269440;
Nearest TSS
ENST00000518652/Upstream/100914; ENST00000528286/Downstream/168857;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/947535, chr8-CpG: 224/Downstream/552760
Upstream sequence
cctatctcaaagttgacttgtccaaaacagaacttttgattatcaatttcaccccacacgtgtttacatgcacacacacacacacccacacaaacacaca
Downstream sequence
aaataaaaacaaagctgcttgtcctttcccatcccattaaatagtatcacctttctcccagttgcccaggccaaaacctaggaatttcccataattattc
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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