Basic Information
VIS ID
TVIS42001077
Fusion event
EBV-C8orf37-AS1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
168661
Orient
+
Integrated sequence
CCTAGGGAATGTTAGATCTTACCAAGTAAGCACCCGAAGATGAACAGCACAATTCCAAGGAACAATGCCTGTCCGTGCAAATTCCAGAGAGCGATGAGCA| |GGAGGGTGACTGGGGAAAGAGGAGAAAGTGCGTTAGAGAAGGAAGAGTAAGGGAAAGGGGGTGTGGGGCAAAGGGTGTAATACTTACTCATCAGTAGGAG
Host Sequence
Chromosome
chr8
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
96636069/95623841 (Hg38)
End
96636069/95623841 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA8B
Target gene
C8orf37-AS1
Nearest miRNA
hsa-mir-12123/Upstream/550845; hsa-mir-10400/Downstream/2769804;
Nearest TSS
ENST00000518652/Upstream/118435; ENST00000614093/Downstream/174554;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/354322, chr8-CpG: 118/Downstream/520694
Upstream sequence
agattttatatgaagatattcccgtttccaacgaaatcctcaaagctatccaaatatccacttgcagattctacaaaaagagtgtttcaaaactgctcta
Downstream sequence
aggtgccacatacttttaaatgaccagatctcacaagaactcactatcatgaggacaccatcaagaggatggtgctaaaccattcatgagaaatccccca
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
Curate