Basic Information
VIS ID
TVIS42001078
Fusion event
EBV-CCDC26 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
78483
Orient
+
Integrated sequence
TGGAGATGGACTTGGTGTCACCGGTGATGCGCCTGACGTTGTGCCGGCTGGTGTTGGGCTGGTGACATCCGCGGTGGATACAGTGGGGCCTGTGCTTGCA| |GGTGCGGTGAGGTTGGTAGGCACGTGAGTAGAGCTGGGTAGACCTGTCGTTGTATTGGGATCAGCAAATCCAGTTGTATTCAAGGTAGGGGAGGTGGTGG
Host Sequence
Chromosome
chr8
Cytoband
q24.21
Reference genome
GRCh37/hg19
Start
130495321/129483075 (Hg38)
End
130495321/129483075 (Hg38)
Orient
+
Location type
Intronic
Target gene
CCDC26
Nearest miRNA
hsa-mir-1204/Upstream/1332887; hsa-mir-10400/Downstream/982;
Nearest TSS
ENST00000518652/Upstream/67126; ENST00000524100/Downstream/91916;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1633097, chr8-CpG: 122/Downstream/456051
Upstream sequence
cacgtcctgtcatgccctgtccctggcctgagcattggccctggccctgtcctgcttctggccctgccccggagttgaccaggcactgccatggcccagt
Downstream sequence
GGCAaagaagaagaggaagaggaagaagaggaagaggaagaggaagaagaagaagaaggaggagaggagggaagggggaagggggaaggaggaagggaga
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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