Basic Information
VIS ID
TVIS42001079
Fusion event
EBV-chr8:q24.3 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
82798
Orient
+
Integrated sequence
TTCTTGATTTGTCAATCCATGGCAGGCCCCGCCCTCGGACCCCCGAGTGGCCTGTTCAAGGGGAAGGTGGCCAAAATGTCACAGGCCCTGAAACTAGAAG| |GGTGGTGGTGTCAGCTGTTGTTCACATGTGTCAGGATGACGAGTTTCCGGATCTACAAGATCCTCCAGATGAGGCCTAAGCAAAGGTGTAGAAGTGTGTC
Host Sequence
Chromosome
chr8
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
143244573/142163212 (Hg38)
End
143244573/142163212 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA8D
Nearest miRNA
hsa-mir-1204/Upstream/376899; hsa-mir-10400/Downstream/13127;
Nearest TSS
ENST00000518652/Upstream/73385; ENST00000517704/Downstream/35144;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/41705, chr8-CpG: 45/Downstream/88474
Upstream sequence
AGTTCTTAGGCTTCACAATCAGATTCTGAGTAGCAACACATTAATTCAAGCAGATTGATGCCTCAAGGAGTCTCTGTGGCCTTGCCTTTCCATTTGCTCA
Downstream sequence
atggattgacagatggatggaggatagatgaatgaaagagagatgaagatggagcatggaggatggatgaatgggatggatggctagttggatggatgga
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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