VISDB Viral Integration Site DataBase

VIS ID

TVIS42001081

Fusion event

EBV-LINGO2 integration

Validated

No

Detection method

GenCap Enrichment+NGS

Data source

Curated

Sample type

Disease

Gastric carcinoma (GC)

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

EBV

Reference genome

Start

75379

Orient

-

Integrated sequence

CGCGTTAACGTAGCAACCAGACTCCACACCAAATAAACATTTTATTGGTAAAACAAGGGATATGAAGGTGTCATTGACCCGAGGATCCAAACCCCCTCCC| |CTGTCTCCCCTCGAGCGCCTCGCTCAGCCCACTATCACCCATGGCCAGGCTCGGCACCTCCTCGAAGGTGCAGCTGGCCCACCTAAAGAGAGATCTGGGG

Chromosome

chr9

Cytoband

p21.1

Reference genome

Start

End

28402579/28402581 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-587 ; hsa-mir-7162-5p ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-2115-5p ; hsa-mir-1976 ; hsa-mir-6893-3p ; hsa-mir-370-3p ; hsa-mir-660-3p ; hsa-mir-5193

Nearest miRNA

hsa-mir-101-2/Upstream/6890396; hsa-let-7a-1/Downstream/461045;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/828592, chr9-CpG: 74/Downstream/809592

Upstream sequence

aaacaaacaaaGAAAAATAAATAAAtaaactggtgcaacctctttggagggcacaattttgcagtatctattaatatgaaaaatgtatttatccttgact

Downstream sequence

TCATTTGAGACTCTTTCTCCAAGAACAACATCTAAACCTTCCATTGCTGCTTCTCTTAATAACAACTCTGTCTATCACAGGAGGAAAATTATTGTGATAG