Basic Information
VIS ID
TVIS42001082
Fusion event
EBV-chr9:q21.13 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
7167
Orient
-
Integrated sequence
TTGCAAGTCAGGATTCTCTAATCCCTCTGGGAGAAGGGTATTCGGCTTGTCCGCTATTTTTTTGTGGCTAGTTTTGCACCCACAACATGTAAGGGCCCGC| |TACCCCTACAACACAAAACAAACTATCTCCCCTAACCATCCTTTTGCCAATCAATTCTGTGACAGGGTTTCCTGGACACCCAGTCTTAGTTCAGGTAGAC
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
74888833/72273917 (Hg38)
End
74888833/72273917 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/1463833; hsa-let-7a-1/Downstream/11695831;
Nearest TSS
ENST00000422679/Upstream/16581; ENST00000451596/Downstream/31513;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/123930, chr9-CpG: 176/Downstream/90312
Nearby gene
LOC100289320(+1530) ;
Upstream sequence
GCTACACATTTTTGTCACTTAAAATAGGGATAATTTTACTGCAAAGTAGATGACTTTGATTTGCATAATTTTACAACTAAAAGAGGTTTTTATCTAATTT
Downstream sequence
TACATAAGCAGAATATGTATGGGGAGAAAAAAAGAAAATGGTCAAGTGAGATTTGGCAGGATTCTTCTGGAACTGGACACACATCTGCCAGGAATCAATT
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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