Basic Information
VIS ID
TVIS42001083
Fusion event
EBV-LINC01501 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
7201
Orient
+
Integrated sequence
AGGGTATTCGGCTTGTCCGCTATTTTTTTGTGGCTAGTTTTGCACCCACAACATGTAAGGGCCCGCTACCCCTACAACACAAAACAAACTATCTCCCCTA| |ACCATCCTTTTGCCAATCAATTCTGTGACAGGGTTTCCTGGACACCCAGTCTTAGTTCAGGTAGACACCCAGTTATGCAGTGCCACCAATTCCAACCATT
Host Sequence
Chromosome
chr9
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
93254720/90492438 (Hg38)
End
93254720/90492438 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA9D
Target gene
LINC01501
Nearest miRNA
hsa-mir-101-2/Upstream/468903; hsa-let-7a-1/Downstream/1143813;
Nearest TSS
ENST00000422679/Upstream/25493; ENST00000476708/Downstream/90256;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/815829, chr9-CpG: 20/Downstream/150256
Upstream sequence
tattaactggtcttcttctttcctttcttcttccccAGCTAATATTGCCAGTCATTGAAATATTGCCAGTCAGTCCTGCTGGCTCGAGCAAGTTTGGGTT
Downstream sequence
gttgcagtgagtggagattgcaccactgcactccagcctggtgacagagcgagactccctctcaaaaaaaaaaaaaaaaaaaagaggttaagaactactg
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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