Basic Information
VIS ID
TVIS42001085
Fusion event
EBV-chr9:q22.33 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
77960
Orient
-
Integrated sequence
GTCTCAGTGACATGGAAGAGGTTGAACTTGAAGTTATGTTATGTTGGCCTGTGGTAACAGCACTGGTTGCATTTTTTGGTTGGCTGGTAACTACTGGGGT| |GGGACTTGTTCCTCCTAAGGTGTGGTTGGTGGCATTTGCCTGTGGACTTGTTTCTCCCACAGTAGGGCCGGTGGCATTTGGGGTTGGGGTAGTCACTGCT
Host Sequence
Chromosome
chr9
Cytoband
q22.33
Reference genome
GRCh37/hg19
Start
101032252/98269970 (Hg38)
End
101032252/98269970 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/40753; hsa-mir-12126/Downstream/8330958;
Nearest TSS
ENST00000422679/Upstream/14249; ENST00000610463/Downstream/33364;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/13671, chr9-CpG: 230/Downstream/437327
Upstream sequence
tgtggtcatctaagtcttcttgtaggccaagaataacttgttttatgaacctgggtgcttcagtgttgagtgtgtatacatttacaatagttaaaccttc
Downstream sequence
GTCCCCGCCTCTGGGGCTGGGGAAGAAATGCCCTGCTCGAGTTGCTTACAAGGTAGACCCTGACCCTGCAACCCGCCCCCCAGGAGGCTGTGTGTGCTTG
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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