Basic Information
VIS ID
TVIS42001086
Fusion event
EBV-chrX:p22.33 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
110334
Orient
-
Integrated sequence
CGAGGTCAGGCCCATGTCTAAGTTCAGGTTCCACATCTGCGACAGCACCTCCAACAGCACCACCTTTGGGGCTGCAAATTGCAAAAAGTAGAGCGGGTCG| |GATCGGTCAAATCCCATGTCAGGGTTGGGGTAGGGGATTTTGTGGGTGGAGTCAGCGAGGTGCATGATACCATAGAGCAGCGAGTAGCCGAGCGACTGCA
Host Sequence
Chromosome
chrX
Cytoband
p22.33
Reference genome
GRCh37/hg19
Start
1543780/1424887 (Hg38)
End
1543780/1424887 (Hg38)
Orient
-
Location type
Intronic
Target gene
ASMTL ; CRLF2
miRNAs that regulate target gene
hsa-mir-98-5p
Nearest miRNA
hsa-mir-3690-1/Upstream/130895; hsa-let-7f-2/Downstream/1184304;
Nearest TSS
ENST00000429181/Upstream/21377; ENST00000381261/Downstream/10504;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/5640, chrX-CpG: 32/Downstream/2883
Nearest cancer related gene
CRLF2(OG, No orient, 0)
Upstream sequence
tgtcagtattcaataagtatctgttgaaagaatgTAAAGGGGATCTTAAATCTGGAAAATAATGCTTGAGTAGAATAGAATTTTTTTAAGAGATGAGTGA
Downstream sequence
atccaccaatccatccaccttcccatccatgtatctatccatccattgatcaatccatctgtccatccatccatccatccatccctcctcccatccatct
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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