Basic Information
VIS ID
TVIS42001088
Fusion event
EBV-chrX:p22.33 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
97567
Orient
+
Integrated sequence
GGAGTAGATTTGCCTCCCTGGTTTCCACCTATGGTGGAAGGGGCTGCCGCGGAGGGTGATGACGGAGATGACGGAGATGAAGGAGGTGATGGAGATGAGG| |GTGAGGAAGGGCAGGAGTGATGTAACTTGTTAGGAGACGCCCTCAATCGTATTAAAAGCCGTGTATTCCCCCGCACTAAAGAATAAATCCCCAGTAGACA
Host Sequence
Chromosome
chrX
Cytoband
p22.33
Reference genome
GRCh37/hg19
Start
2023961/1905068 (Hg38)
End
2023961/1905068 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3690-1/Upstream/611076; hsa-let-7f-2/Downstream/704123;
Nearest TSS
ENST00000429181/Upstream/137721; ENST00000381180/Downstream/361869;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/244601, chrX-CpG: 18/Downstream/281652
Upstream sequence
atgactttcgaagcacaaaaatatttaattttaatgaagtcaaatttagttattctttcttttcttacttgtgctttttgtgtcatatctaagaaggttt
Downstream sequence
tggtggtaatgatgatgatgagggtggtaataatgtcacctgccccacagaactgttagaagagacaaatgagctaaattatacagtttcttgaaaatca
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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