Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS42001089
Fusion event
EBV-DHRSX integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Start
89317
Orient
+
Integrated sequence
GAGACTGGAACTGTACTAAATTTGCTGACATATGTACAATGAGAGCCAAAAATTTGATAAACCTTAAAAGTCCCCCCATCTAATGATGTCCAGTTCCCTT| |CTCCCACCCTGTACACCCCGACCCAAAGGGACTCAATGGCATTCAGATTTCTAGTTACCACAGGTAGAATATCGGGCGTTGGCCCATAAAAATAAGTGCA
Host Sequence
Chromosome
chrX
Cytoband
p22.33
Reference genome
Start
End
2145595/2227554 (Hg38)
Orient
+
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-3690-1/Upstream/933562; hsa-let-7f-2/Downstream/381637;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/40569, chrX-CpG: 133/Downstream/261175
Upstream sequence
CCCAACAGTATTTTTTTTGCATTAATGGTGAAAGCCATGCATCATGTAAGATGATAGTTATGAAATGAGTATGTCTCCATTAAGATGCTGTAGTGGAGTA
Downstream sequence
gaaaggagggaagaagggaggaagggaaggatgaaaaaagaaaaaaaaacaggaaggaagcaaagaaggaagggaggcaggaagcaaagaaggaaaggag
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.