VISDB Viral Integration Site DataBase

VIS ID

TVIS42001091

Fusion event

EBV-chr3:p21.31 integration

Validated

No

Detection method

GenCap Enrichment+NGS

Data source

Curated

Sample type

Disease

Gastric carcinoma (GC)

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

EBV

Reference genome

Start

7663

Orient

-

Integrated sequence

TAAATTAGGATAGCATATACTACCCAGATATAGATTAGGATAGCATATGCTACCCAGATATAGATTAGGATAGCCTATGCTACCCAGATATAGATTAGGA| |TAGCATATGCTACCCAGATATAGATTAGGATAGCATATGCTATCCAGATATTTGGGTAGTATATGCTACCCAGATATAAATTAGGATAGCATATACTACC

Chromosome

chr3

Cytoband

p21.31

Reference genome

Start

End

47227735/47186245 (Hg38)

Orient

-

Location type

ncRNA_intronic

Target gene

KIF9-AS1 ; SETD2

miRNAs that regulate target gene

hsa-mir-106b-5p ; hsa-mir-26a-5p ; hsa-mir-199b-5p ; hsa-mir-21-5p ; hsa-mir-186-5p ; hsa-mir-526b-3p ; hsa-mir-199a-5p ; hsa-mir-1289 ; hsa-mir-3198 ; hsa-mir-3658 ; hsa-mir-3667-5p ; hsa-mir-4294 ; hsa-mir-4309 ; hsa-mir-4726-3p ; hsa-mir-5702

Nearest miRNA

hsa-mir-12127/Upstream/2324264; hsa-let-7g/Downstream/663310;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/21399, chr3-CpG: 96/Downstream/96012

Nearest cancer related gene

SETD2(TSG, No orient, 0)

Upstream sequence

GCATTATTAGACTGTGAGGCATTTTGGTAGGAGCTGCAGCCGGTAGATGGCTAAAGAGGAGGACTTTGGGCAATCCAGAGTCAGAGTGAGGTCATTAAGC

Downstream sequence

attacttatttgatcagtttagtacaatgccatcaatataacagacctatagtattctgaatatagtattctgaaggatagccagattatttatttttct