Basic Information
VIS ID
TVIS42001093
Fusion event
EBV-LOC100132154 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
89160
Orient
+
Integrated sequence
TCTGAGATCTCCGTGTTCCCAAAGGACGCGAAGCAGACTGACTACGATGCATCCACTGAAAGTGAGCTAGATTAAGGGGATCCAAGGTGACCCCTGTTAG| |CTATTTGATCTTTGACTGACACATAAACATGGTTTAAGGAATGAACACTCATGGTGTGAGACTGGAACTGTACTAAATTTGCTGACATATGTACAATGAG
Host Sequence
Chromosome
chr14
Cytoband
q32.33
Reference genome
GRCh37/hg19
Start
106208708/105742371 (Hg38)
End
106208708/105742371 (Hg38)
Orient
+
Location type
ncRNA_exonic
Target gene
LOC100132154
Nearest miRNA
hsa-mir-1185-1/Upstream/102139; hsa-mir-4507/Downstream/115142;
Nearest TSS
ENST00000550708/Upstream/19844; ENST00000414005/Downstream/700;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/20027, chr14-CpG: 25/Downstream/26780
Upstream sequence
atataccacatacaaccaatataccacacacacacaacccatacacctatacacacacacctatacaccacacacagcccatacactacacaatcacacc
Downstream sequence
ACAAGATTTGGGCTCTGCAGAGAGAAGATTGGGAGTTACTGGAATCTGGGAGGAGAGAAGGTGTCCGAGCTGAGGGAGTGGAGAGTTTGGCCTTTGGGGT
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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