Basic Information
VIS ID
TVIS42001095
Fusion event
EBV-TENM3-AS1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
80400
Orient
-
Integrated sequence
TCCCTATGGCCTAAGTGTGTGATGTGTGTTTTTACCCATCACACAACAACAAGGTAAGTAATTTGTTGCCGTTGGTTTCAGCGCATCGACACACGAGCCA| |TAGACCAGTTTTTCGGATCCCAGATTTCAAATACCGAGATGTACATAATGTATGCCATGGCCATTCGACAGGCCATTAGAGATCGTCGGAGAAATCCAGC
Host Sequence
Chromosome
chr4
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
183062886/182141733 (Hg38)
End
183062886/182141733 (Hg38)
Orient
-
Location type
ncRNA_exonic
Target gene
TENM3-AS1
Nearest miRNA
hsa-mir-12113/Upstream/7717869; hsa-mir-1305/Downstream/27560;
Nearest TSS
ENST00000502981/Upstream/56597; ENST00000512480/Downstream/2043;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/405, chr4-CpG: 210/Downstream/510
Upstream sequence
ATGCCGGACGTGAAGGGGAGGACGGAGGCGCGTAGACGCGGCTGGGGACGAACCCGAGGACGCATTGCTCCCTGGACGGGCACGCGGGACCTCCCGGAGT
Downstream sequence
AGCCAAGATTTATTACCATTTCTAAGTTTTATGAGTTCTATTGTTTTCCTACCTTTATTACCAGCGTTAGCTGTAATGAGGATTCTAGAAAAAAGAGCTG
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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