Basic Information
VIS ID
TVIS42001096
Fusion event
EBV-chr9:p22.3 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
66470
Orient
+
Integrated sequence
GGAACAGAATGAGCGGAGTCCCGCTGAGCAGATGCCGCCTCGTCCCATGGAACCGGCGCAGGTTGCGGGGCCGGTTGACATCATGAGCAAGGGCCCAGGG| |GAGGGACCAGGTGGGTGGTGTGTGCCCGGGGGATTGGAAGTGTGCTATAAGTACCGTCAGCTCTTCTCAGAGGATGATCTGTTGGAGACTGACGGTTTTA
Host Sequence
Chromosome
chr9
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
15126745/15126747 (Hg38)
End
15126745/15126747 (Hg38)
Orient
+
Location type
ncRNA_intronic
Nearest miRNA
hsa-mir-101-2/Upstream/9118843; hsa-let-7a-1/Downstream/3446559;
Nearest TSS
ENST00000422679/Upstream/215752; ENST00000461041/Downstream/61318;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/133353, chr9-CpG: 20/Downstream/105942
Upstream sequence
AGAATTCAGCTTCAGTCCAGAGCAGCTTATGCATCTGCCTACAGGCACTCAGCCCAAACCTTGATATAAGAATGGAACATACTACCACACACGAAAGTAG
Downstream sequence
acaaacacacacacaGAGGTTCATTATCAAGTTATAGTGATCGATAAGTTAAAGACTCAGTTTAATGCTTTGGTTAGAAATAGGATTGCAAACATAACCT
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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