Basic Information
VIS ID
TVIS42001097
Fusion event
EBV-chr9:q21.31 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Start
77864
Orient
+
Integrated sequence
TTTCACCACCTGTTGGGTGAGCGGAGGTTAGTAAAGGCATATGTGACGTTGAATTGTCACTGGTGGAGGGGCTGAGTGTCTCTGGGTTTGAACTGGGTCT| |CAGTGACATGGAAGAGGTTGAACTTGAAGTTATGTTATGTTGGCCTGTGGTAACAGCACTGGTTGCATTTTTTGGTTGGCTGGTAACTACTGGGGTGGGA
Host Sequence
Chromosome
chr9
Cytoband
q21.31
Reference genome
End
81414602/78799686 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/7989602; hsa-let-7a-1/Downstream/5170062;
Upstream sequence
GAATAATTAAGAATTCAGCTTCAGTCCAGAGCAGCTTATGCATCTGCCTACAGGCACTCAGCCCAAACCTTGATATAAGAATGGAACATACTACCACACA
Downstream sequence
ggtttcctggaagcaaggaggaattaagaatctattatagcaatctacatgagaaatgatggtaactggtccaaaacaatagcaatgggaatggacagaa
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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