Basic Information
VIS ID
TVIS42001098
Fusion event
EBV-chr14:q31.1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Hodgkin lymphoma (HL)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
8201
Orient
+
Integrated sequence
TCAGGCGCAAGTGTGTGTAATTTGTCCTCCAGATCGCAGCAATCGCGCCCCTATCTTGGCCCGCCCACCTACTTATGCAGGTATTCCCCGGGGTGCCATT| |AGTGGTTTTGTGGGCAAGTGGTTTGACCGCAGTGGTTAGCGGGGTTACAATCAGCCAAGTTATTACACCCTTATTTTACAGTCCAAAACCGCAGGGCGGC
Host Sequence
Chromosome
chr14
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
80455482/79989139 (Hg38)
End
80455482/79989139 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1260a/Upstream/2722849; hsa-mir-1185-1/Downstream/13959087;
Nearest TSS
ENST00000550708/Upstream/14970; ENST00000553979/Downstream/222175;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/127151, chr14-CpG: 29/Downstream/952227
Nearby gene
LOC105370590(-2031) ;
Upstream sequence
CCTGGATGCAGGCTACTCTAGGGCACCTGTCCCGCCTTGAGCTGGAGGGCGAGGCCTGGGCTGGCTTACCTGGGCACGGTGGGCATGTGTGAGTTTTGTC
Downstream sequence
TGCTTCTGGGTAATCATTGATGAATGACTTAGCATTAGTTGAGCATGGATACGCAAGACCAGGAATCCCACACAAGTGTAGAATACCAGAATGTAGAGCA
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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