VISDB Viral Integration Site DataBase

VIS ID

TVIS42001099

Fusion event

EBV-ATP8B4 integration

Validated

No

Detection method

GenCap Enrichment+NGS

Data source

Curated

Sample type

Disease

Hodgkin lymphoma (HL)

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

EBV

Reference genome

Start

8033

Orient

-

Integrated sequence

ATATGCTACCCAGATATAGATTAGGATAGCCTATGCTACCCAGATATAGATTAGGATAGCATATGCTATCCAGATATTTGGGTAGTATATGCTACCCATG| |GCAACATTAGCCCACCGTGCTCTCAGCGACCTCGTGAATATGAGGACCAACAACCCTGTGCTTGGCGCTCAGGCGCAAGTGTGTGTAATTTGTCCTCCAG

Chromosome

chr15

Cytoband

q21.2

Reference genome

Start

End

50333386/50041189 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-5585-3p ; hsa-mir-6857-3p ; hsa-mir-6761-5p ; hsa-mir-4494 ; hsa-mir-208a-5p ; hsa-mir-208b-5p ; hsa-mir-4499 ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p

Nearest miRNA

hsa-mir-10393/Upstream/872036; hsa-mir-11181/Downstream/319140;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/419904, chr15-CpG: 86/Downstream/140936

Upstream sequence

tttaaAATTATTTTTTGTTTAATTtttttttactttttaataatattccttatgactggtgtgagatgatgtggtacatcattacggttttgatttgcat

Downstream sequence

cctgaaaaatcagataacaaggaaaaaccacacatttactccaaagatgccattgctcaaatgattgttgaaatttcctctcttagaattacctctggag